Variant report

Variant	rs2199687
Chromosome Location	chr12:21431994-21431995
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10841784	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10841786	0.88[EUR][1000 genomes]
rs10841787	0.88[EUR][1000 genomes]
rs10841789	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11045930	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307908	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12821721	0.92[AFR][1000 genomes]
rs2417971	0.87[EUR][1000 genomes]
rs2417972	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2900480	0.83[AFR][1000 genomes]
rs34249976	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4148993	0.85[EUR][1000 genomes]
rs6487215	0.83[AFR][1000 genomes]
rs66777941	0.83[AFR][1000 genomes]
rs7305911	0.85[EUR][1000 genomes]
rs7962263	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7962919	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7978322	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv898886	chr12:21354494-21450250	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv898890	chr12:21421343-21441918	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv898891	chr12:21422253-21453355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv898892	chr12:21428371-21453355	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21416200-21449600	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:21422600-21447200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:21426600-21460400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:21431200-21441000	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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