Variant report

Variant	rs2199845
Chromosome Location	chr10:49961114-49961115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10857630	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857634	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12413949	0.93[ASN][1000 genomes]
rs12416600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12416601	0.91[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs12572455	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12572801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17836430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17836431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2199844	1.00[ASN][1000 genomes]
rs3849147	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3860187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936516	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4363511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57486611	0.92[ASN][1000 genomes]
rs57837101	1.00[ASN][1000 genomes]
rs59178559	1.00[ASN][1000 genomes]
rs59859369	0.90[ASN][1000 genomes]
rs7084008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308017	0.93[ASN][1000 genomes]
rs73308028	0.99[ASN][1000 genomes]
rs73308035	1.00[ASN][1000 genomes]
rs73308045	1.00[ASN][1000 genomes]
rs7916463	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9629920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49957000-49961200	Strong transcription	Primary B cells from cord blood	blood
2	chr10:49957000-49962000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:49957600-49963400	Strong transcription	GM12878-XiMat	blood
4	chr10:49958600-49967800	Weak transcription	Lung	lung
5	chr10:49959000-49968000	Weak transcription	Spleen	Spleen
6	chr10:49959400-49966800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:49960200-49962200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:49960200-49962400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:49960200-49967000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:49960200-49968400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:49960800-49962800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:49960800-49966000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:49960800-49967400	Weak transcription	Primary hematopoietic stem cells	blood

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