Variant report

Variant	rs2200257
Chromosome Location	chr4:173278413-173278414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10016863	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10017948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs10018148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs10520234	0.82[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs10866354	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs11132943	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1120573	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13134697	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1396220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1508259	0.81[JPT][hapmap]
rs1508260	0.93[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs17058244	0.86[CEU][hapmap]
rs2054685	0.86[CEU][hapmap]
rs2626620	0.86[CEU][hapmap]
rs2654774	0.86[CEU][hapmap]
rs2654776	0.86[CEU][hapmap]
rs2654781	0.86[CEU][hapmap]
rs2654782	0.86[CEU][hapmap]
rs2654785	0.86[CEU][hapmap]
rs2654787	0.86[CEU][hapmap]
rs2654788	0.86[CEU][hapmap]
rs2661806	0.84[CEU][hapmap]
rs28556781	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28691833	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34735035	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553633	0.85[JPT][hapmap]
rs6823609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6852501	0.93[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7680231	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9995549	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9996897	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173275600-173278800	Enhancers	Hela-S3	cervix
2	chr4:173276800-173278600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:173278400-173278600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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