Variant report

Variant	rs2200412
Chromosome Location	chr12:30285130-30285131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10771638	0.99[EUR][1000 genomes]
rs10771639	0.86[EUR][1000 genomes]
rs10771640	0.85[EUR][1000 genomes]
rs10771642	0.81[EUR][1000 genomes]
rs10771647	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10771648	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10843617	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10843618	0.87[EUR][1000 genomes]
rs10843619	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10843620	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10843627	0.84[EUR][1000 genomes]
rs11050669	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050670	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11050672	0.87[EUR][1000 genomes]
rs11050673	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11050674	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11050675	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12366875	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12368648	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1385562	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1385563	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1485425	0.85[EUR][1000 genomes]
rs1552342	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1552343	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1552344	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1909182	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1909183	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2171038	0.98[EUR][1000 genomes]
rs2200410	0.98[EUR][1000 genomes]
rs2351209	0.85[EUR][1000 genomes]
rs2351210	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2351211	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3959917	0.99[EUR][1000 genomes]
rs4244851	0.84[EUR][1000 genomes]
rs4930885	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4930886	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4930888	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4930889	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4930890	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4931264	0.99[EUR][1000 genomes]
rs4931265	1.00[EUR][1000 genomes]
rs4931266	1.00[EUR][1000 genomes]
rs4931268	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4931271	0.84[EUR][1000 genomes]
rs6487880	0.84[EUR][1000 genomes]
rs6487881	0.84[EUR][1000 genomes]
rs72640154	0.84[EUR][1000 genomes]
rs7296068	0.84[EUR][1000 genomes]
rs7299613	0.98[EUR][1000 genomes]
rs7310880	0.84[EUR][1000 genomes]
rs7311139	0.84[EUR][1000 genomes]
rs7313801	0.98[EUR][1000 genomes]
rs8181729	0.86[EUR][1000 genomes]
rs901075	0.85[EUR][1000 genomes]
rs901076	0.85[EUR][1000 genomes]
rs901077	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948495	chr12:30090771-30344772	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1042081	chr12:30147993-30344670	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541436	chr12:30147993-30344670	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30284000-30285400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:30284600-30286200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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