Variant report

Variant	rs2200707
Chromosome Location	chr3:155725030-155725031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155723529..155726254-chr3:155754834..155758611,3	K562	blood:
2	chr3:155723376..155725127-chr3:155726648..155728889,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169282	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10804773	0.86[JPT][hapmap]
rs10804774	0.89[CHD][hapmap];0.85[JPT][hapmap]
rs10936020	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs1131925	0.81[JPT][hapmap]
rs13061037	0.96[CEU][hapmap];0.80[MKK][hapmap]
rs13065994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091683	0.81[AMR][1000 genomes]
rs2054878	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2063903	0.85[JPT][hapmap]
rs35472369	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs358703	0.87[MEX][hapmap]
rs3772116	0.81[CEU][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap]
rs4680223	0.81[AMR][1000 genomes]
rs6441028	0.93[CHD][hapmap]
rs6763830	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6799267	0.85[JPT][hapmap]
rs6804740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7629523	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7633168	0.81[CEU][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap]
rs7651038	0.81[CEU][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.82[TSI][hapmap]
rs7652005	0.81[CEU][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap]
rs965035	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2200707	RARRES1	cis	cerebellum	SCAN
rs2200707	SLC33A1	cis	cerebellum	SCAN
rs2200707	SLC33A1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155724000-155725200	Enhancers	HepG2	liver

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