Variant report

Variant	rs2200826
Chromosome Location	chr2:179822321-179822322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10169992	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10171173	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10194023	1.00[JPT][hapmap]
rs10497528	0.84[EUR][1000 genomes]
rs10930845	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10930847	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11678043	0.85[ASN][1000 genomes]
rs11681839	0.88[EUR][1000 genomes]
rs11684630	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13403584	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16866583	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1847420	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4894072	0.89[EUR][1000 genomes]
rs6715920	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6727743	0.89[EUR][1000 genomes]
rs6747725	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7574599	0.90[EUR][1000 genomes]
rs924800	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv583756	chr2:179758007-179843612	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1000545	chr2:179768359-179843612	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875456	chr2:179775893-179896787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875457	chr2:179775893-179966804	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv875458	chr2:179780624-179966804	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1011538	chr2:179803786-179862194	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179770000-179848200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr2:179775600-179824200	Weak transcription	Left Ventricle	heart
3	chr2:179775600-179826400	Weak transcription	Pancreas	Pancrea
4	chr2:179794600-179822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:179802800-179829400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:179803600-179827600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr2:179804000-179831600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:179805600-179824200	Weak transcription	Primary B cells from cord blood	blood
9	chr2:179806800-179843600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr2:179810600-179824200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr2:179812600-179839000	Weak transcription	HSMMtube	muscle
12	chr2:179813600-179824200	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:179814000-179828200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:179816600-179841200	Weak transcription	Right Ventricle	heart
15	chr2:179819800-179825800	Weak transcription	Fetal Heart	heart
16	chr2:179820000-179824200	Weak transcription	Right Atrium	heart
17	chr2:179821000-179822800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:179821000-179828200	Strong transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links