Variant report

Variant	rs2202064
Chromosome Location	chr6:121464689-121464690
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1935939	0.84[AFR][1000 genomes]
rs4612203	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6901295	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs6910170	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
5	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:121463400-121469600	Weak transcription	Fetal Stomach	stomach
9	chr6:121463600-121474200	Weak transcription	Ovary	ovary
10	chr6:121463600-121476800	Weak transcription	Gastric	stomach
11	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
12	chr6:121464200-121473200	Weak transcription	Dnd41	blood
13	chr6:121464400-121465400	Enhancers	HSMM	muscle
14	chr6:121464400-121465600	Enhancers	HMEC	breast
15	chr6:121464400-121465600	Enhancers	NHEK	skin
16	chr6:121464600-121464800	Enhancers	Osteobl	bone
17	chr6:121464600-121465200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:121464600-121466800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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