Variant report
Variant | rs2204120 |
---|---|
Chromosome Location | chr19:44971041-44971042 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:44969208..44972041-chr19:44979244..44981448,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000267242 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10221516 | 0.85[EUR][1000 genomes] |
rs10412793 | 0.82[EUR][1000 genomes] |
rs11666995 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs11670601 | 0.82[EUR][1000 genomes] |
rs11670713 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12462473 | 0.81[EUR][1000 genomes] |
rs13343871 | 0.82[EUR][1000 genomes] |
rs13344684 | 0.82[EUR][1000 genomes] |
rs13344700 | 0.82[EUR][1000 genomes] |
rs13345771 | 0.82[EUR][1000 genomes] |
rs13345783 | 0.82[EUR][1000 genomes] |
rs17727392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2222406 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28615408 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs34400340 | 0.82[EUR][1000 genomes] |
rs3786501 | 0.82[EUR][1000 genomes] |
rs4802227 | 0.82[EUR][1000 genomes] |
rs4803713 | 0.82[EUR][1000 genomes] |
rs4803714 | 0.83[EUR][1000 genomes] |
rs4803715 | 0.82[EUR][1000 genomes] |
rs4803716 | 0.82[EUR][1000 genomes] |
rs4803717 | 0.82[EUR][1000 genomes] |
rs4803718 | 0.82[EUR][1000 genomes] |
rs4803719 | 0.82[EUR][1000 genomes] |
rs4803720 | 0.82[EUR][1000 genomes] |
rs4803721 | 0.82[EUR][1000 genomes] |
rs58630472 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59202354 | 0.82[EUR][1000 genomes] |
rs59807984 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv912112 | chr19:44853707-45011727 | Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
2 | nsv912114 | chr19:44858776-45002563 | ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
3 | nsv1061350 | chr19:44869075-45035469 | Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
4 | nsv524201 | chr19:44955927-44978183 | ZNF genes & repeats Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
5 | nsv525472 | chr19:44955927-44978183 | ZNF genes & repeats Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
6 | nsv912115 | chr19:44957508-44995990 | ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
7 | nsv960853 | chr19:44958445-44982821 | ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
8 | nsv978867 | chr19:44963452-44982821 | ZNF genes & repeats Strong transcription Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:44966800-44992400 | ZNF genes & repeats | Liver | Liver |
2 | chr19:44967200-44992800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
3 | chr19:44968000-44971800 | ZNF genes & repeats | Brain Anterior Caudate | brain |
4 | chr19:44969800-44992200 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |