Variant report

Variant	rs2204778
Chromosome Location	chr15:93627174-93627175
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58977620	1.00[AMR][1000 genomes]
rs61536221	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv833096	chr15:93584742-93766257	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv916180	chr15:93613475-94150693	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93614400-93628800	Weak transcription	Dnd41	blood
2	chr15:93616800-93628000	Enhancers	Psoas Muscle	Psoas
3	chr15:93617000-93629000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:93617200-93630800	Weak transcription	Ovary	ovary
5	chr15:93617800-93627200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:93617800-93630000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:93617800-93630800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:93618200-93627400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr15:93618200-93630800	Weak transcription	Pancreas	Pancrea
10	chr15:93620200-93629000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:93620400-93630400	Weak transcription	Esophagus	oesophagus
12	chr15:93620600-93629800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:93622000-93629000	Enhancers	Colon Smooth Muscle	Colon
14	chr15:93623000-93628400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:93623000-93629000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:93623600-93629400	Genic enhancers	Fetal Muscle Leg	muscle
17	chr15:93624000-93629600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:93624200-93629200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:93625000-93629200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:93625200-93627600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:93625200-93629000	Weak transcription	Brain Germinal Matrix	brain
22	chr15:93625400-93629400	Strong transcription	Fetal Muscle Trunk	muscle
23	chr15:93625800-93628400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:93625800-93629000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:93626800-93627200	Enhancers	Brain Anterior Caudate	brain
26	chr15:93627000-93627400	Weak transcription	Fetal Stomach	stomach
27	chr15:93627000-93627400	Enhancers	Stomach Smooth Muscle	stomach
28	chr15:93627000-93627800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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