Variant report

Variant	rs2205220
Chromosome Location	chr14:80307727-80307728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1013449	0.95[EUR][1000 genomes]
rs1013450	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10144662	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs1022433	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1022434	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11159418	0.95[EUR][1000 genomes]
rs1159038	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12885142	0.95[EUR][1000 genomes]
rs1997565	0.95[EUR][1000 genomes]
rs1997566	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1997567	0.95[EUR][1000 genomes]
rs2178886	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2205218	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2205221	0.88[CEU][hapmap];0.89[YRI][hapmap]
rs2205222	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2223032	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2223034	0.95[EUR][1000 genomes]
rs2223035	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2293831	0.95[EUR][1000 genomes]
rs2371104	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4243665	0.88[EUR][1000 genomes]
rs4903881	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4903882	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4903883	0.95[EUR][1000 genomes]
rs6574525	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6574526	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6574527	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6574528	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7156557	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7157705	1.00[CEU][hapmap]
rs7157885	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs727105	0.95[EUR][1000 genomes]
rs727106	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8003909	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8009908	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8010821	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8016178	0.95[EUR][1000 genomes]
rs8016336	0.95[EUR][1000 genomes]
rs8017057	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs8020458	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs932261	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs932262	0.88[EUR][1000 genomes]
rs932263	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs932264	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs932265	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs959165	0.95[EUR][1000 genomes]
rs980008	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80303200-80308000	Weak transcription	Brain Hippocampus Middle	brain
2	chr14:80303200-80308400	Weak transcription	NH-A	brain
3	chr14:80303400-80308200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:80303400-80308400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:80303400-80308400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:80303400-80308400	Weak transcription	Osteobl	bone
7	chr14:80306400-80308000	Enhancers	Liver	Liver
8	chr14:80306800-80308000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:80306800-80308400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:80307000-80308400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:80307200-80308600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:80307600-80309000	Enhancers	Brain Substantia Nigra	brain

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