Variant report

Variant	rs2205604
Chromosome Location	chr1:175155207-175155208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175153553..175155422-chr1:175156636..175159440,2	K562	blood:
2	chr1:175154624..175159314-chr1:175159716..175163217,5	K562	blood:

Variant related genes	Relation type
ENSG00000235750	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1008459	0.95[ASN][1000 genomes]
rs2272785	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3753559	0.95[ASN][1000 genomes]
rs3753560	0.89[ASN][1000 genomes]
rs3766686	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175129200-175159600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:175135000-175158400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:175136000-175157600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:175141000-175160200	Weak transcription	HUVEC	blood vessel
5	chr1:175141400-175158400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:175143000-175160800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:175143600-175158000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:175146000-175157800	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr1:175146200-175159400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:175146200-175159800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:175146600-175155600	Weak transcription	Ovary	ovary
12	chr1:175146800-175160400	Weak transcription	Fetal Intestine Large	intestine
13	chr1:175147000-175155600	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:175147000-175156200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:175147200-175155600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:175147600-175160400	Weak transcription	Colonic Mucosa	Colon
17	chr1:175148200-175157400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr1:175148200-175157600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr1:175148200-175157800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:175148400-175159200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:175148800-175158000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr1:175151200-175155600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:175151400-175157400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr1:175151400-175157400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr1:175152200-175156000	Strong transcription	NHEK	skin
26	chr1:175152200-175159600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr1:175152400-175157200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr1:175152600-175155600	Weak transcription	K562	blood
29	chr1:175153000-175155600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:175153000-175155600	Weak transcription	Spleen	Spleen
31	chr1:175153000-175155800	Weak transcription	Aorta	Aorta
32	chr1:175153000-175156400	Weak transcription	Fetal Stomach	stomach
33	chr1:175153200-175155600	Weak transcription	Fetal Intestine Small	intestine
34	chr1:175153400-175155600	Weak transcription	Thymus	Thymus
35	chr1:175153600-175155600	Weak transcription	Liver	Liver
36	chr1:175153600-175155600	Weak transcription	Psoas Muscle	Psoas
37	chr1:175153600-175155600	Weak transcription	GM12878-XiMat	blood
38	chr1:175153600-175155600	Weak transcription	HMEC	breast
39	chr1:175153600-175156000	Enhancers	Primary T cells from cord blood	blood
40	chr1:175153600-175156400	Enhancers	Adipose Nuclei	Adipose
41	chr1:175153600-175159600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr1:175153800-175155400	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr1:175153800-175155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:175153800-175155600	Weak transcription	Lung	lung
45	chr1:175153800-175155600	Weak transcription	Right Ventricle	heart
46	chr1:175153800-175155600	Weak transcription	Small Intestine	intestine
47	chr1:175153800-175156000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:175153800-175156000	Weak transcription	Gastric	stomach
49	chr1:175153800-175157200	Weak transcription	Fetal Thymus	thymus
50	chr1:175153800-175157600	Weak transcription	Rectal Mucosa Donor 29	rectum

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