Variant report

Variant	rs2206529
Chromosome Location	chr6:56246873-56246874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56241466..56244174-chr6:56245136..56247766,2	MCF-7	breast:
2	chr6:56246077..56248373-chr6:56250654..56253145,3	MCF-7	breast:
3	chr6:56243942..56247033-chr6:56303376..56305321,3	MCF-7	breast:
4	chr6:56241662..56247297-chr6:56405930..56409718,9	MCF-7	breast:
5	chr6:56246314..56247058-chr6:56303128..56303966,2	MCF-7	breast:
6	chr6:56246501..56248507-chr6:56300256..56301859,2	MCF-7	breast:
7	chr6:56246730..56249107-chr6:56300637..56303346,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1323321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904796	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56240400-56247400	Weak transcription	Pancreas	Pancrea
2	chr6:56240400-56252400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:56240600-56247400	Weak transcription	Aorta	Aorta
4	chr6:56240600-56252200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:56240600-56252400	Weak transcription	Left Ventricle	heart
6	chr6:56240800-56251200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:56241200-56249000	Weak transcription	Psoas Muscle	Psoas
8	chr6:56241200-56249600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:56241200-56252400	Weak transcription	Right Ventricle	heart
10	chr6:56244000-56250200	Enhancers	Hela-S3	cervix
11	chr6:56244000-56251000	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:56244000-56252200	Weak transcription	Placenta	Placenta
13	chr6:56245400-56248600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:56245600-56249600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:56245600-56251600	Weak transcription	Stomach Mucosa	stomach
16	chr6:56245800-56252200	Enhancers	HepG2	liver
17	chr6:56246400-56247400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:56246400-56247400	Enhancers	Fetal Intestine Large	intestine
19	chr6:56246400-56247800	Enhancers	HMEC	breast
20	chr6:56246600-56247000	Enhancers	Brain Hippocampus Middle	brain
21	chr6:56246600-56247000	Enhancers	Fetal Intestine Small	intestine
22	chr6:56246600-56247000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:56246600-56247200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:56246600-56247200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:56246600-56247200	Enhancers	Brain Angular Gyrus	brain
26	chr6:56246600-56247200	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:56246600-56247400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:56246600-56247400	Enhancers	Brain Substantia Nigra	brain
29	chr6:56246600-56247400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:56246600-56247800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:56246600-56247800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:56246600-56247800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:56246600-56247800	Enhancers	NHEK	skin
34	chr6:56246800-56247200	Enhancers	Brain Anterior Caudate	brain
35	chr6:56246800-56247400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:56246800-56247400	Enhancers	Small Intestine	intestine
37	chr6:56246800-56247400	Enhancers	HSMMtube	muscle
38	chr6:56246800-56247800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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