Variant report

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23032213-23033000	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr20:23031474-23033134	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:23031576..23035125-chr20:23112541..23115430,6	K562	blood:
2	chr20:23031306..23034005-chr20:23046124..23048629,2	MCF-7	breast:
3	chr20:23032271..23034692-chr20:23112541..23114516,2	K562	blood:
4	chr20:23027006..23030975-chr20:23031507..23034254,5	MCF-7	breast:
5	chr20:23032699..23035331-chr20:23059587..23061154,2	MCF-7	breast:
6	chr20:23031846..23034845-chr20:23202722..23206110,3	K562	blood:
7	chr20:23030571..23033059-chr20:23188435..23191076,2	MCF-7	breast:
8	chr20:23025165..23029019-chr20:23031172..23033319,4	K562	blood:
9	chr20:23030735..23033607-chr20:23271363..23275068,3	K562	blood:
10	chr20:23025358..23028275-chr20:23031819..23034490,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-8	chr20:23030380-23035547	NONHSAT079029

No data

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2207109	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207110	0.92[ASN][1000 genomes]
rs2424503	0.86[ASN][1000 genomes]
rs6076016	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23029200-23033200	Active TSS	Psoas Muscle	Psoas
2	chr20:23031600-23033000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr20:23031600-23033200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr20:23032000-23033000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:23032400-23033000	Enhancers	Esophagus	oesophagus
6	chr20:23032400-23033200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:23032400-23033200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr20:23032400-23033200	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr20:23032400-23033800	Weak transcription	Gastric	stomach
10	chr20:23032400-23034000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr20:23032600-23033400	Enhancers	Placenta	Placenta
12	chr20:23032600-23033400	Enhancers	Right Ventricle	heart
13	chr20:23032600-23041800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:23032800-23033000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
15	chr20:23032800-23033000	Bivalent Enhancer	Fetal Brain Female	brain
16	chr20:23032800-23033000	Bivalent Enhancer	Fetal Lung	lung
17	chr20:23032800-23034400	Enhancers	K562	blood
18	chr20:23032800-23041400	Weak transcription	Spleen	Spleen

Quick Search: