Variant report

Variant	rs2207549
Chromosome Location	chr11:32368457-32368458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10767930	0.91[AFR][1000 genomes]
rs10767931	0.85[AFR][1000 genomes]
rs10835887	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs10835888	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs11031729	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12099181	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12789861	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2207548	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122775	0.93[AFR][1000 genomes]
rs932503	0.88[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2207549	TCP11L1	cis	cerebellum	SCAN
rs2207549	WT1AS	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32361000-32372400	Enhancers	Fetal Heart	heart
2	chr11:32367200-32369600	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:32367200-32369600	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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