Variant report

Variant	rs220979
Chromosome Location	chr20:23012609-23012610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11696134	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220990	1.00[YRI][hapmap]
rs2235951	0.88[AFR][1000 genomes]
rs2235952	0.88[AFR][1000 genomes]
rs2268198	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2567608	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2567614	0.88[AFR][1000 genomes]
rs6082981	1.00[YRI][hapmap]
rs6113909	0.88[AFR][1000 genomes]
rs7361512	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:23010200-23012800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr20:23010600-23012800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr20:23011200-23013800	Enhancers	Left Ventricle	heart
5	chr20:23011400-23014600	Enhancers	Dnd41	blood
6	chr20:23011600-23012800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr20:23011600-23013000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr20:23011800-23013400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:23012000-23014800	Enhancers	Right Ventricle	heart
10	chr20:23012200-23014000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:23012600-23012800	Flanking Active TSS	Fetal Heart	heart
12	chr20:23012600-23014600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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