Variant report

Variant	rs2212724
Chromosome Location	chr18:39123436-39123437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1942059	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1942073	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1942074	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1942075	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1942076	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1942077	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1942079	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1942080	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1942087	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2000705	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2226735	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2587625	0.82[ASN][1000 genomes]
rs2587633	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2587635	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2612323	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2612324	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2612326	0.82[ASN][1000 genomes]
rs2612327	0.81[ASN][1000 genomes]
rs2612329	0.82[ASN][1000 genomes]
rs2612332	0.83[ASN][1000 genomes]
rs2612340	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2612354	0.87[EUR][1000 genomes]
rs2612355	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2612357	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2703159	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2703177	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2848764	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2848765	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2848775	0.83[ASN][1000 genomes]
rs2848781	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39118600-39125800	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links