Variant report

Variant	rs2214536
Chromosome Location	chr7:86676537-86676538
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11768303	0.80[AFR][1000 genomes]
rs11973613	1.00[AMR][1000 genomes]
rs11975067	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981874	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981886	1.00[AMR][1000 genomes]
rs11983715	1.00[AMR][1000 genomes]
rs11984243	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12704329	0.80[AFR][1000 genomes]
rs13225695	0.80[AFR][1000 genomes]
rs2007519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2189518	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2189520	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34335609	0.80[AFR][1000 genomes]
rs34527027	0.80[AFR][1000 genomes]
rs34690369	0.80[AFR][1000 genomes]
rs34768475	0.80[AFR][1000 genomes]
rs35021944	0.80[AFR][1000 genomes]
rs35311174	0.80[AFR][1000 genomes]
rs35427247	0.80[AFR][1000 genomes]
rs35463465	0.80[AFR][1000 genomes]
rs35763089	0.80[AFR][1000 genomes]
rs35765384	0.80[AFR][1000 genomes]
rs55745425	0.80[AFR][1000 genomes]
rs56003141	0.80[AFR][1000 genomes]
rs67068271	0.80[AFR][1000 genomes]
rs6947236	1.00[AMR][1000 genomes]
rs73200986	0.80[AFR][1000 genomes]
rs73200989	0.80[AFR][1000 genomes]
rs73200991	0.80[AFR][1000 genomes]
rs73200993	0.80[AFR][1000 genomes]
rs73200996	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv8171	chr7:86664012-86682448	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86659400-86682600	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:86669200-86685800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:86673400-86682800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:86675800-86683800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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