Variant report

Variant	rs2215382
Chromosome Location	chr7:15055010-15055011
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14757081..14758001-chr7:15054605..15056087,5	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10238161	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10238625	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10249299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10264063	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10264723	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10266209	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10267273	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10807778	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10950546	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10950548	0.89[EUR][1000 genomes]
rs10950549	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11514706	0.81[EUR][1000 genomes]
rs12113083	0.84[EUR][1000 genomes]
rs12538003	0.89[EUR][1000 genomes]
rs12538043	0.88[EUR][1000 genomes]
rs12540947	0.86[EUR][1000 genomes]
rs12666046	0.83[EUR][1000 genomes]
rs12699673	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2191346	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2215381	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2358158	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2358159	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4719430	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4721400	0.89[EUR][1000 genomes]
rs62448644	0.85[EUR][1000 genomes]
rs6461153	0.89[EUR][1000 genomes]
rs6960043	0.85[EUR][1000 genomes]
rs6962498	0.83[EUR][1000 genomes]
rs6972333	0.85[EUR][1000 genomes]
rs6972516	0.84[EUR][1000 genomes]
rs6976086	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6978885	0.84[EUR][1000 genomes]
rs6980437	0.81[EUR][1000 genomes]
rs7781710	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7784091	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7786873	0.81[EUR][1000 genomes]
rs7798124	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7798360	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758104	chr7:14896877-15299786	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2759512	chr7:14896877-15299786	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv887719	chr7:14995522-15072029	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv464389	chr7:15008138-15098004	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv606285	chr7:15008138-15098004	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv887720	chr7:15008714-15072029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv517876	chr7:15010824-15198589	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv830910	chr7:15011028-15212309	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv887721	chr7:15025332-15163610	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1017308	chr7:15047280-15074656	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv2761127	chr7:15051210-15152813	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1029986	chr7:15051210-15152813	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv522499	chr7:15051754-15148454	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1018434	chr7:15054190-15144078	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15052200-15055200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:15052200-15055200	Weak transcription	Right Ventricle	heart
3	chr7:15054800-15055200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr7:15055000-15055200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
5	chr7:15055000-15055200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:15055000-15055200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:15055000-15055200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
8	chr7:15055000-15055200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr7:15055000-15055200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr7:15055000-15055200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:15055000-15055200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:15055000-15055200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:15055000-15055200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:15055000-15055200	Enhancers	Liver	Liver
15	chr7:15055000-15055200	Enhancers	Brain Germinal Matrix	brain
16	chr7:15055000-15055200	Enhancers	Brain Hippocampus Middle	brain
17	chr7:15055000-15055200	Enhancers	Fetal Brain Female	brain
18	chr7:15055000-15055200	Weak transcription	Left Ventricle	heart
19	chr7:15055000-15055200	Enhancers	Right Atrium	heart
20	chr7:15055000-15055200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr7:15055000-15055200	Enhancers	Hela-S3	cervix
22	chr7:15055000-15055200	Enhancers	HMEC	breast
23	chr7:15055000-15055200	Enhancers	NHEK	skin
24	chr7:15055000-15055400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:15055000-15055400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr7:15055000-15055400	Enhancers	Fetal Intestine Large	intestine
27	chr7:15055000-15055400	Enhancers	Fetal Intestine Small	intestine
28	chr7:15055000-15055600	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr7:15055000-15055600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:15055000-15055800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:15055000-15055800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr7:15055000-15055800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr7:15055000-15055800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr7:15055000-15055800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:15055000-15055800	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr7:15055000-15055800	Enhancers	Fetal Heart	heart
37	chr7:15055000-15055800	Active TSS	Fetal Kidney	kidney
38	chr7:15055000-15055800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr7:15055000-15056200	Active TSS	Pancreatic Islets	Pancreatic Islet

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