Variant report

Variant	rs2215436
Chromosome Location	chr7:84860085-84860086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84859657..84862402-chr7:84865275..84867622,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10216305	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11973517	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17562848	0.91[ASN][1000 genomes]
rs17648312	0.92[ASN][1000 genomes]
rs2109503	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2109504	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2159578	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2191488	0.85[ASN][1000 genomes]
rs2240890	0.92[ASN][1000 genomes]
rs2534854	0.94[ASN][1000 genomes]
rs2534866	0.92[ASN][1000 genomes]
rs2534867	0.92[ASN][1000 genomes]
rs2534872	0.92[ASN][1000 genomes]
rs2534873	0.92[ASN][1000 genomes]
rs2732751	0.92[ASN][1000 genomes]
rs2732755	0.90[ASN][1000 genomes]
rs2732757	0.91[ASN][1000 genomes]
rs2732762	0.92[ASN][1000 genomes]
rs28597887	0.86[ASN][1000 genomes]
rs34319950	0.92[ASN][1000 genomes]
rs4568550	0.86[ASN][1000 genomes]
rs56918106	0.91[ASN][1000 genomes]
rs61131189	0.92[ASN][1000 genomes]
rs62462197	0.92[ASN][1000 genomes]
rs62462217	0.86[ASN][1000 genomes]
rs66988389	0.86[ASN][1000 genomes]
rs68126254	0.85[ASN][1000 genomes]
rs6951642	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888646	chr7:84754151-84905855	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3375773	chr7:84831558-84901773	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1017834	chr7:84832489-85083958	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv538996	chr7:84832489-85083958	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84859400-84860600	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:84860000-84860600	Enhancers	Primary B cells from cord blood	blood

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