Variant report

Variant	rs2215932
Chromosome Location	chr7:78209947-78209948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10258158	1.00[EUR][1000 genomes]
rs11981895	1.00[EUR][1000 genomes]
rs57042465	1.00[AMR][1000 genomes]
rs60512308	1.00[AMR][1000 genomes]
rs6974517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792998	1.00[EUR][1000 genomes]
rs9656146	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78198400-78216000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:78205400-78211600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:78205400-78211600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:78207600-78210400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:78208000-78210600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:78208200-78210200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:78208600-78211600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:78208800-78210000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:78208800-78212000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:78209000-78210800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:78209000-78219000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:78209800-78211200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:78209800-78217200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:78209800-78217400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:78209800-78219600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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