Variant report

Variant	rs2216696
Chromosome Location	chr5:91315222-91315223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10058971	1.00[JPT][hapmap]
rs16870341	0.86[ASN][1000 genomes]
rs425488	1.00[ASN][1000 genomes]
rs73131429	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73131460	1.00[ASN][1000 genomes]
rs73131461	1.00[ASN][1000 genomes]
rs73131462	0.86[ASN][1000 genomes]
rs73133111	0.86[ASN][1000 genomes]
rs73133112	0.86[ASN][1000 genomes]
rs73771619	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830397	chr5:91213921-91396644	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv471023	chr5:91275312-91477046	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv598937	chr5:91275313-91381882	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91312800-91315400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:91313000-91315400	Enhancers	A549	lung
3	chr5:91313000-91315800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:91313200-91315600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:91313800-91316200	Enhancers	Hela-S3	cervix
6	chr5:91314800-91315800	Enhancers	HMEC	breast
7	chr5:91315000-91315400	Enhancers	HSMM	muscle
8	chr5:91315200-91315400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:91315200-91315600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:91315200-91315600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:91315200-91315800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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