Variant report

Variant	rs2216828
Chromosome Location	chr2:31336499-31336500
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17010518	1.00[AMR][1000 genomes]
rs17010606	1.00[AMR][1000 genomes]
rs72856384	1.00[AMR][1000 genomes]
rs72856391	1.00[AMR][1000 genomes]
rs72856393	1.00[AMR][1000 genomes]
rs73921507	1.00[AMR][1000 genomes]
rs7591404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31310600-31346800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:31320600-31337800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:31329200-31348200	Weak transcription	A549	lung
4	chr2:31332400-31347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:31332600-31348600	Weak transcription	NHEK	skin
6	chr2:31332600-31348800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:31332600-31349000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:31332600-31349000	Weak transcription	HMEC	breast
9	chr2:31332800-31346600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:31335200-31344600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:31336200-31336600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:31336200-31336600	Enhancers	Fetal Muscle Leg	muscle
13	chr2:31336400-31336600	Enhancers	Spleen	Spleen
14	chr2:31336400-31337200	Enhancers	Brain Germinal Matrix	brain
15	chr2:31336400-31343800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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