Variant report

Variant	rs2218565
Chromosome Location	chr11:36336263-36336264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10466394	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10501149	0.80[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap]
rs10768207	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836537	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10836538	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11033552	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11033559	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs191318	0.84[EUR][1000 genomes]
rs3824946	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755450	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7127214	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130870	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv32924	chr11:36336072-36336295	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36332000-36338600	Weak transcription	Gastric	stomach
2	chr11:36332800-36336400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr11:36333600-36336400	Enhancers	Fetal Intestine Large	intestine
4	chr11:36333800-36336400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:36333800-36336800	Enhancers	Fetal Intestine Small	intestine
6	chr11:36333800-36337200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:36334000-36336600	Enhancers	Ovary	ovary
8	chr11:36334200-36339800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:36335000-36337200	Enhancers	Brain Substantia Nigra	brain
10	chr11:36335000-36338000	Enhancers	Adipose Nuclei	Adipose
11	chr11:36335200-36339600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:36335400-36340200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:36335600-36339200	Weak transcription	Colonic Mucosa	Colon
14	chr11:36335800-36337000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:36336000-36337800	Enhancers	Brain Hippocampus Middle	brain
16	chr11:36336200-36336600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:36336200-36337400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:36336200-36340000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:36336200-36340200	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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