Variant report

Variant	rs2219159
Chromosome Location	chr15:33368933-33368934
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:33362639..33365167-chr15:33367329..33369547,2	K562	blood:
2	chr15:33368885..33371162-chr15:33373678..33376639,3	MCF-7	breast:
3	chr15:33362639..33366197-chr15:33366478..33369547,3	K562	blood:
4	chr15:33364817..33369587-chr15:33370489..33373626,4	MCF-7	breast:
5	chr15:33368160..33370967-chr15:33379580..33382279,2	K562	blood:
6	chr15:33312479..33313997-chr15:33367303..33369166,2	MCF-7	breast:
7	chr15:33309677..33312273-chr15:33367650..33370378,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1026752	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10519781	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10519788	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10775202	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10851823	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072170	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072175	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072187	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11636433	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11639303	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12439012	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12440002	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17235533	0.84[ASN][1000 genomes]
rs17235547	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17816711	0.80[AMR][1000 genomes]
rs2291064	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2291065	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2291066	0.81[AMR][1000 genomes]
rs2306278	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28510826	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28603193	0.80[ASN][1000 genomes]
rs4779604	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4779605	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4779606	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4780074	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8033302	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8039005	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs922510	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs922511	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2219159	FMN1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33361200-33378800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:33361600-33375600	Weak transcription	HSMM	muscle
3	chr15:33361800-33372200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:33361800-33375600	Weak transcription	HSMMtube	muscle
5	chr15:33362000-33376000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:33362200-33372200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:33362600-33375000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:33364000-33374000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:33366600-33372000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:33367000-33372200	Weak transcription	NHLF	lung
11	chr15:33367400-33369200	Weak transcription	Fetal Thymus	thymus
12	chr15:33368400-33373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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