Variant report
| Variant | rs2220203 |
|---|---|
| Chromosome Location | chr8:65150994-65150995 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11992818 | 0.86[EUR][1000 genomes] |
| rs1485486 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1485488 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16930988 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16930997 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2054776 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2119184 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2165251 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2883910 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2883988 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34215741 | 0.83[EUR][1000 genomes] |
| rs4515592 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4517161 | 0.86[EUR][1000 genomes] |
| rs4737667 | 0.86[EUR][1000 genomes] |
| rs4737668 | 0.83[EUR][1000 genomes] |
| rs66464473 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs66771575 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67315487 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6987428 | 0.87[EUR][1000 genomes] |
| rs755764 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7833101 | 0.86[EUR][1000 genomes] |
| rs936790 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65150000-65151800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
