Variant report

Variant	rs2220458
Chromosome Location	chr3:76110145-76110146
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10511039	0.95[ASN][1000 genomes]
rs11917746	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12489859	0.90[ASN][1000 genomes]
rs12714846	0.86[ASN][1000 genomes]
rs12714847	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12714848	0.91[ASN][1000 genomes]
rs1471994	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1489098	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1489099	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1965300	0.92[ASN][1000 genomes]
rs2324470	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2324471	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4484199	0.81[EUR][1000 genomes]
rs4624567	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4856003	0.95[ASN][1000 genomes]
rs4856004	0.82[AMR][1000 genomes]
rs6780227	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6782618	0.86[ASN][1000 genomes]
rs6783384	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6788637	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7610010	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7625148	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7632524	0.94[ASN][1000 genomes]
rs7653310	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9812834	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9814169	0.85[AMR][1000 genomes]
rs9815982	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9833136	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9837726	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876995	chr3:76015252-76114539	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1012705	chr3:76047819-76276542	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv998038	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv536591	chr3:76053664-76218646	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1007586	chr3:76053664-76280612	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv979847	chr3:76058868-76143057	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999868	chr3:76068393-76274977	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv869827	chr3:76074846-76142916	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv432458	chr3:76077110-76119510	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2757876	chr3:76077290-76167295	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv876996	chr3:76094221-76131251	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1004976	chr3:76098108-76218646	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:76095000-76111000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:76106600-76111800	Weak transcription	Stomach Mucosa	stomach
3	chr3:76108600-76111800	Weak transcription	NH-A	brain
4	chr3:76109800-76110400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:76109800-76113400	Enhancers	HUES48 Cell Line	embryonic stem cell

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