Variant report

Variant	rs2221252
Chromosome Location	chrY:6892424-6892425
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2202098	1.00[ASN][1000 genomes]
rs2889462	1.00[ASN][1000 genomes]
rs4258053	1.00[ASN][1000 genomes]
rs4457386	1.00[ASN][1000 genomes]
rs4570212	1.00[ASN][1000 genomes]
rs4570213	1.00[ASN][1000 genomes]
rs4637903	1.00[ASN][1000 genomes]
rs5001814	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917092	chrY:6390454-7324376	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:6884800-6955400	Weak transcription	Pancreas	Pancrea
2	chrY:6888000-6908000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrY:6892000-6911000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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