Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168742807..168744829-chr1:168753851..168756396,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225826	Chromatin interaction

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10918983	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2206300	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168738800-168745600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:168741000-168744000	Enhancers	Liver	Liver
3	chr1:168741200-168744000	Enhancers	Rectal Smooth Muscle	rectum
4	chr1:168741200-168744200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:168741800-168744000	Enhancers	Adipose Nuclei	Adipose
6	chr1:168741800-168744000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:168742800-168744000	Enhancers	Left Ventricle	heart
8	chr1:168742800-168744000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:168743000-168744000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:168743000-168744000	Enhancers	Fetal Intestine Small	intestine
11	chr1:168743000-168744000	Enhancers	Lung	lung
12	chr1:168743000-168744000	Enhancers	HepG2	liver
13	chr1:168743200-168744200	Enhancers	Fetal Heart	heart
14	chr1:168743400-168744000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:168743400-168744000	Enhancers	Ovary	ovary
16	chr1:168743600-168744000	Enhancers	Fetal Stomach	stomach
17	chr1:168743600-168744000	Enhancers	Gastric	stomach
18	chr1:168743600-168744000	Enhancers	Psoas Muscle	Psoas
19	chr1:168743600-168744000	Enhancers	Right Ventricle	heart
20	chr1:168743600-168744400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:168743800-168744000	Enhancers	Stomach Smooth Muscle	stomach
22	chr1:168743800-168746200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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