Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1016429	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323413	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337679	0.92[ASN][1000 genomes]
rs16920640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35994821	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4742819	0.89[EUR][1000 genomes]
rs56257997	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58492917	0.81[AFR][1000 genomes]
rs58984022	0.81[AFR][1000 genomes]
rs60523933	0.81[AFR][1000 genomes]
rs62576305	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62576306	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62577383	0.81[AFR][1000 genomes]
rs62577392	0.81[AFR][1000 genomes]
rs62577393	0.81[AFR][1000 genomes]
rs6415854	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479061	0.92[ASN][1000 genomes]
rs7026897	0.92[ASN][1000 genomes]
rs7469637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854314	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104425800-104436000	Weak transcription	Liver	Liver
2	chr9:104434000-104436800	Enhancers	Adipose Nuclei	Adipose
3	chr9:104435200-104436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:104435400-104435600	Enhancers	Colon Smooth Muscle	Colon
5	chr9:104435400-104435600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr9:104435400-104436000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:104435400-104436200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:104435400-104437200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:104435400-104437400	Enhancers	Fetal Intestine Large	intestine

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