Variant report
| Variant | rs2225385 |
|---|---|
| Chromosome Location | chr14:83550911-83550912 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10484144 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10484148 | 0.82[ASN][1000 genomes] |
| rs17618343 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17618745 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17619707 | 0.82[ASN][1000 genomes] |
| rs17619743 | 0.82[ASN][1000 genomes] |
| rs17619785 | 0.82[ASN][1000 genomes] |
| rs17619863 | 0.82[ASN][1000 genomes] |
| rs17619954 | 0.82[ASN][1000 genomes] |
| rs17620045 | 0.82[ASN][1000 genomes] |
| rs17620140 | 0.82[ASN][1000 genomes] |
| rs17620419 | 0.82[ASN][1000 genomes] |
| rs17678909 | 0.90[CEU][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes] |
| rs17680295 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17680331 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17680532 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17692603 | 0.82[ASN][1000 genomes] |
| rs17692627 | 0.82[ASN][1000 genomes] |
| rs17692662 | 0.82[ASN][1000 genomes] |
| rs17692781 | 0.82[ASN][1000 genomes] |
| rs17692829 | 0.82[ASN][1000 genomes] |
| rs17693044 | 0.82[ASN][1000 genomes] |
| rs17693086 | 0.82[ASN][1000 genomes] |
| rs17693128 | 0.82[ASN][1000 genomes] |
| rs17693321 | 0.82[ASN][1000 genomes] |
| rs17693345 | 0.82[ASN][1000 genomes] |
| rs17693506 | 0.82[ASN][1000 genomes] |
| rs2225383 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2225384 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902126 | chr14:83499664-83673387 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2761848 | chr14:83502492-83554586 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv902127 | chr14:83524701-83746190 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1041909 | chr14:83532477-83904217 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv542148 | chr14:83532477-83904217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv902128 | chr14:83541394-83665111 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:83550200-83551200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
