Variant report

Variant	rs2225922
Chromosome Location	chr6:93616295-93616296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10455545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1338254	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1538273	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2066012	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485827	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2485829	0.81[EUR][1000 genomes]
rs2485831	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2506908	0.85[EUR][1000 genomes]
rs2506939	0.81[EUR][1000 genomes]
rs2506941	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4707766	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62416201	0.88[EUR][1000 genomes]
rs9342340	0.87[EUR][1000 genomes]
rs9345295	0.88[EUR][1000 genomes]
rs9345296	0.88[EUR][1000 genomes]
rs9345297	0.88[EUR][1000 genomes]
rs9345298	0.87[EUR][1000 genomes]
rs9345299	0.87[EUR][1000 genomes]
rs9345300	0.89[EUR][1000 genomes]
rs9345302	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9345303	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9351341	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9351342	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9351343	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9353958	0.88[EUR][1000 genomes]
rs9353959	0.88[EUR][1000 genomes]
rs9353961	0.82[EUR][1000 genomes]
rs9353963	0.88[ASN][1000 genomes]
rs9353965	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360001	0.88[EUR][1000 genomes]
rs9360002	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9363012	0.88[EUR][1000 genomes]
rs9363014	0.89[EUR][1000 genomes]
rs9363015	0.89[EUR][1000 genomes]
rs9363016	0.89[EUR][1000 genomes]
rs9363018	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9452152	0.88[EUR][1000 genomes]
rs955385	0.83[EUR][1000 genomes]
rs955386	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1031496	chr6:93365937-93715883	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2754317	chr6:93552479-93995479	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1846588	chr6:93561150-93722247	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428489	chr6:93572854-93767118	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3422432	chr6:93576108-94001222	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv2757186	chr6:93577417-93671674	Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759457	chr6:93577417-93671674	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2753778	chr6:93582879-93622879	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv886359	chr6:93584284-93632765	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv886360	chr6:93587834-93640548	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93615800-93617200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:93616200-93616400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:93616200-93617000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:93616200-93617400	Enhancers	HUES6 Cell Line	embryonic stem cell

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