Variant report

Variant	rs2226095
Chromosome Location	chr1:95099230-95099231
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95092034..95094712-chr1:95098482..95100203,2	K562	blood:
2	chr1:95098692..95101011-chr1:95110470..95114437,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10782984	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1539151	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1539623	0.80[EUR][1000 genomes]
rs1620835	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17111912	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1778196	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1778218	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794489	0.87[ASN][1000 genomes]
rs2971938	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2996285	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2996288	0.87[ASN][1000 genomes]
rs35360343	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3814017	0.83[EUR][1000 genomes]
rs4847320	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6661485	0.80[EUR][1000 genomes]
rs7550601	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1001230	chr1:95085184-95108531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95089800-95100000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:95089800-95100400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:95090000-95102800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:95090200-95099600	Weak transcription	Fetal Stomach	stomach
5	chr1:95090800-95100600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:95091600-95100400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:95095400-95100600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:95095400-95100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:95095400-95100600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:95095800-95099400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:95095800-95101400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:95095800-95102200	Weak transcription	Fetal Intestine Small	intestine
13	chr1:95095800-95108400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:95096000-95100400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:95096600-95100600	Weak transcription	Placenta	Placenta
16	chr1:95098200-95100600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:95098400-95099400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:95098400-95099600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:95098400-95099600	Enhancers	NHDF-Ad	bronchial
20	chr1:95098600-95099600	Enhancers	Ovary	ovary
21	chr1:95098600-95099600	Enhancers	NHLF	lung
22	chr1:95098600-95101000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr1:95098800-95100400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:95098800-95100400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:95099000-95101400	Enhancers	Pancreas	Pancrea
26	chr1:95099000-95102000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:95099200-95099600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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