Variant report

Variant	rs2226247
Chromosome Location	chr10:90818155-90818156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12770042	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12770067	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12772488	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12777813	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1937325	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1937337	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1937338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1937345	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2154254	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2247441	1.00[CHD][hapmap];0.88[GIH][hapmap]
rs2253622	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2254636	1.00[CHB][hapmap]
rs2255470	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2489881	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2494644	0.90[EUR][1000 genomes]
rs2801525	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2801534	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2801535	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2801537	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2841014	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2841015	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2841022	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2841027	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2841028	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2863224	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2863225	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7079258	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7082593	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7094490	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7099481	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099595	0.87[CHD][hapmap]
rs9325605	0.96[CEU][hapmap];0.94[GIH][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9420506	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895880	chr10:90816060-90874029	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90801400-90829400	Weak transcription	Aorta	Aorta
2	chr10:90803200-90825000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90807800-90822200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:90807800-90825000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:90808000-90823800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:90811400-90822600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:90817000-90822600	Weak transcription	Ovary	ovary
8	chr10:90817200-90818800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links