The 2.0 version of rSNPBase

Variant report

Variant rs2227263
Chromosome Location chr6:109802651-109802652
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:109782400-109803000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr6:109789400-109803200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr6:109797800-109803400 Transcr. at gene 5' and 3' Dnd41 blood
4 chr6:109798000-109803400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr6:109798000-109803400 Genic enhancers Fetal Thymus thymus
6 chr6:109798200-109803000 Weak transcription Placenta Amnion Placenta Amnion
7 chr6:109798600-109802800 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
8 chr6:109798600-109803400 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
9 chr6:109799000-109803000 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
10 chr6:109799200-109803000 Weak transcription Colonic Mucosa Colon
11 chr6:109799200-109803400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr6:109799200-109803400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr6:109799200-109803400 Weak transcription Esophagus oesophagus
14 chr6:109799600-109803800 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr6:109799800-109803200 Transcr. at gene 5' and 3' iPS-18 Cell Line embryonic stem cell
16 chr6:109799800-109803400 Enhancers Ovary ovary
17 chr6:109800000-109803200 Genic enhancers Monocytes-CD14+_RO01746 blood
18 chr6:109800000-109803400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr6:109800200-109803000 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr6:109800400-109803200 Transcr. at gene 5' and 3' K562 blood
21 chr6:109800600-109803200 Genic enhancers Primary hematopoietic stem cells blood
22 chr6:109800800-109802800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr6:109800800-109803000 Genic enhancers NHDF-Ad bronchial
24 chr6:109800800-109803200 Genic enhancers Primary B cells from peripheral blood blood
25 chr6:109800800-109803400 Enhancers Thymus Thymus
26 chr6:109801000-109803200 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr6:109801000-109803400 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
28 chr6:109801200-109803000 Genic enhancers Adipose Nuclei Adipose
29 chr6:109801200-109803200 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
30 chr6:109801200-109803200 Transcr. at gene 5' and 3' Primary B cells from cord blood blood
31 chr6:109801200-109803200 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
32 chr6:109801200-109803200 Transcr. at gene 5' and 3' Primary mononuclear cells fromperipheralblood Blood
33 chr6:109801200-109803200 Genic enhancers Fetal Intestine Large intestine
34 chr6:109801200-109803200 Strong transcription Fetal Muscle Trunk muscle
35 chr6:109801200-109803200 Genic enhancers Placenta Placenta
36 chr6:109801200-109803200 Strong transcription Osteobl bone
37 chr6:109801200-109803400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
38 chr6:109801200-109803600 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
39 chr6:109801200-109803600 Enhancers Fetal Heart heart
40 chr6:109801400-109802800 Genic enhancers Aorta Aorta
41 chr6:109801400-109803000 Genic enhancers Muscle Satellite Cultured Cells --
42 chr6:109801400-109803200 Genic enhancers H9 Cell Line embryonic stem cell
43 chr6:109801400-109803200 Genic enhancers Liver Liver
44 chr6:109801400-109803200 Transcr. at gene 5' and 3' Rectal Mucosa Donor 29 rectum
45 chr6:109801400-109803400 Transcr. at gene 5' and 3' HUES6 Cell Line embryonic stem cell
46 chr6:109801400-109803400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
47 chr6:109801400-109803400 Genic enhancers Fetal Muscle Leg muscle
48 chr6:109801400-109803400 Transcr. at gene 5' and 3' GM12878-XiMat blood
49 chr6:109801400-109804400 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
50 chr6:109801600-109802800 Transcr. at gene 5' and 3' Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015