Variant report

Variant	rs2228623
Chromosome Location	chr6:34003685-34003686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12663035	0.85[ASN][1000 genomes]
rs12664932	0.80[ASN][1000 genomes]
rs34208448	0.86[AMR][1000 genomes]
rs3778045	0.83[AMR][1000 genomes]
rs3778049	0.84[ASN][1000 genomes]
rs3778050	0.86[AMR][1000 genomes]
rs4711374	0.83[ASN][1000 genomes]
rs7772059	0.85[ASN][1000 genomes]
rs7775780	0.85[ASN][1000 genomes]
rs9366836	0.83[ASN][1000 genomes]
rs9366837	0.85[ASN][1000 genomes]
rs9368789	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461949	0.84[ASN][1000 genomes]
rs9469690	0.84[ASN][1000 genomes]
rs9469691	0.84[ASN][1000 genomes]
rs9469693	0.84[ASN][1000 genomes]
rs9469694	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv885778	chr6:33942228-34007054	Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	esv3340429	chr6:34002424-34004922	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33984000-34010200	Weak transcription	Brain Anterior Caudate	brain
2	chr6:33984400-34023000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:33986200-34009600	Weak transcription	Right Atrium	heart
4	chr6:33988000-34013600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:33994400-34013000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:34000000-34003800	Weak transcription	GM12878-XiMat	blood
7	chr6:34000200-34016000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:34002800-34027000	Weak transcription	Spleen	Spleen
9	chr6:34003400-34003800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:34003400-34004200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:34003400-34004400	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr6:34003600-34003800	Enhancers	Esophagus	oesophagus
13	chr6:34003600-34004000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:34003600-34004400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links