Variant report

Variant	rs2231715
Chromosome Location	chr1:228264300-228264301
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:228185399..228187182-chr1:228263997..228265663,2	K562	blood:
2	chr1:227946633..227949211-chr1:228261877..228264518,2	K562	blood:
3	chr1:228259486..228261831-chr1:228263458..228267215,4	MCF-7	breast:
4	chr1:228219042..228220629-chr1:228263194..228265966,2	K562	blood:
5	chr1:228199664..228202936-chr1:228261979..228265639,3	MCF-7	breast:
6	chr1:228264092..228266380-chr1:228308990..228311064,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARF1-2	chr1:228264262-228264825	NONHSAT009956

No data

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2231720	1.00[AMR][1000 genomes]
rs56756911	1.00[AMR][1000 genomes]
rs56832724	1.00[AMR][1000 genomes]
rs56986798	1.00[AMR][1000 genomes]
rs57053910	1.00[AMR][1000 genomes]
rs57114383	1.00[AFR][1000 genomes]
rs59699324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61413658	1.00[AMR][1000 genomes]
rs6694537	1.00[AMR][1000 genomes]
rs6704401	1.00[AMR][1000 genomes]
rs73092912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092923	1.00[AMR][1000 genomes]
rs73092944	1.00[AMR][1000 genomes]
rs73092953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092954	1.00[AMR][1000 genomes]
rs73092957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092959	1.00[AMR][1000 genomes]
rs73092999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095404	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095424	1.00[AMR][1000 genomes]
rs73095429	1.00[AMR][1000 genomes]
rs73095437	1.00[AMR][1000 genomes]
rs73095449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010605	chr1:227770415-228332690	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv32853	chr1:227880116-228806209	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv427952	chr1:227881664-228308629	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv826908	chr1:227895386-228691100	Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
5	nsv516409	chr1:228035131-228296745	Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv523935	chr1:228038124-228681749	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
7	nsv832803	chr1:228155118-228313681	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv873252	chr1:228174528-228371551	Strong transcription Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
9	nsv873253	chr1:228231601-228537942	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv873254	chr1:228231601-228543800	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
11	nsv873255	chr1:228254753-228684779	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	133 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228248200-228269000	Weak transcription	Right Atrium	heart
2	chr1:228258600-228269000	Weak transcription	Esophagus	oesophagus
3	chr1:228260200-228268000	Weak transcription	Gastric	stomach
4	chr1:228260200-228269000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:228261200-228267600	Weak transcription	Ovary	ovary
6	chr1:228261600-228269000	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:228262000-228265200	Weak transcription	Lung	lung
8	chr1:228262200-228265000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:228262200-228266400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:228262200-228268800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:228263000-228268800	Weak transcription	Adipose Nuclei	Adipose
12	chr1:228263000-228269200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:228263400-228264800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:228263400-228264800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:228263400-228265400	Weak transcription	Spleen	Spleen
16	chr1:228263400-228266800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr1:228263400-228266800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:228263600-228267000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:228263600-228268800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:228263800-228269200	Weak transcription	Fetal Lung	lung
21	chr1:228264000-228268800	Weak transcription	Fetal Muscle Leg	muscle

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