Variant report

Variant	rs2232178
Chromosome Location	chr22:31534258-31534259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31522240..31525129-chr22:31533508..31536686,3	K562	blood:
2	chr22:31534039..31536501-chr22:31538813..31541013,2	K562	blood:
3	chr22:31476560..31478859-chr22:31533468..31537086,3	MCF-7	breast:
4	chr22:31521352..31522863-chr22:31533988..31536377,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183963	Chromatin interaction
ENSG00000185133	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs5753463	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31519400-31535400	Weak transcription	Lung	lung
2	chr22:31519600-31536000	Weak transcription	Brain Germinal Matrix	brain
3	chr22:31519800-31536000	Weak transcription	Gastric	stomach
4	chr22:31520200-31535800	Weak transcription	Fetal Brain Female	brain
5	chr22:31520400-31538800	Weak transcription	Right Atrium	heart
6	chr22:31522800-31535200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:31523400-31535600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr22:31523800-31535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr22:31524600-31536000	Weak transcription	Right Ventricle	heart
10	chr22:31524800-31536400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr22:31527600-31534400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr22:31528000-31535000	Weak transcription	Esophagus	oesophagus
13	chr22:31528000-31536000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr22:31528200-31534600	Strong transcription	H9 Cell Line	embryonic stem cell
15	chr22:31528200-31536400	Weak transcription	Pancreas	Pancrea
16	chr22:31529000-31535600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr22:31529800-31535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr22:31530000-31534600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr22:31530400-31538400	Weak transcription	Left Ventricle	heart
20	chr22:31531800-31534400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr22:31532000-31534600	Weak transcription	Fetal Intestine Small	intestine
22	chr22:31532800-31535800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr22:31533400-31535200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr22:31533400-31535400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr22:31533600-31534400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr22:31533800-31534400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr22:31534000-31534400	Enhancers	Spleen	Spleen
28	chr22:31534000-31535000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr22:31534200-31534400	Genic enhancers	H1 Cell Line	embryonic stem cell
30	chr22:31534200-31534600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr22:31534200-31534600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr22:31534200-31535000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr22:31534200-31535000	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links