Variant report

Variant	rs2233548
Chromosome Location	chr11:76813991-76813992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11827049	1.00[CHD][hapmap]
rs2276282	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76778600-76818800	Weak transcription	Aorta	Aorta
2	chr11:76792600-76819200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:76794200-76815600	Weak transcription	Osteobl	bone
4	chr11:76794400-76816800	Weak transcription	HSMM	muscle
5	chr11:76794400-76817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:76794400-76817400	Weak transcription	NHLF	lung
7	chr11:76794600-76829200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:76794800-76818800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:76794800-76830200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:76797600-76830000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:76797800-76818400	Weak transcription	Right Atrium	heart
12	chr11:76798200-76814000	Weak transcription	Spleen	Spleen
13	chr11:76798200-76818000	Weak transcription	Right Ventricle	heart
14	chr11:76798800-76838200	Weak transcription	Fetal Kidney	kidney
15	chr11:76800200-76815600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:76800200-76816600	Weak transcription	Small Intestine	intestine
17	chr11:76804800-76819200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:76805800-76815200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:76805800-76818400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:76806000-76814000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:76806200-76815400	Weak transcription	Ovary	ovary
22	chr11:76806200-76825200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:76806600-76818600	Weak transcription	Fetal Lung	lung
24	chr11:76806800-76814800	Weak transcription	Primary T cells from cord blood	blood
25	chr11:76807200-76816600	Weak transcription	Pancreas	Pancrea
26	chr11:76807200-76819000	Weak transcription	Esophagus	oesophagus
27	chr11:76807400-76816000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:76807600-76829200	Weak transcription	Brain Substantia Nigra	brain
29	chr11:76807800-76814000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:76807800-76814000	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:76808000-76814600	Weak transcription	Stomach Mucosa	stomach
32	chr11:76811200-76815800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr11:76811200-76816400	Strong transcription	Fetal Intestine Small	intestine
34	chr11:76811400-76814800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr11:76811400-76817200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:76811400-76818400	Strong transcription	Fetal Stomach	stomach
37	chr11:76811600-76815000	Strong transcription	Liver	Liver
38	chr11:76811600-76815600	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr11:76811600-76816400	Strong transcription	Gastric	stomach
40	chr11:76811600-76817000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:76811800-76814400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:76812200-76815400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:76812400-76816000	Strong transcription	Fetal Intestine Large	intestine
44	chr11:76812600-76815200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:76813000-76817200	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:76813200-76814800	Strong transcription	Colonic Mucosa	Colon
47	chr11:76813200-76816800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:76813200-76818400	Weak transcription	Lung	lung
49	chr11:76813400-76814000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:76813400-76815600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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