Variant report

Variant	rs2234107
Chromosome Location	chr14:24661610-24661611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24657069..24662255-chr14:24679017..24683823,7	K562	blood:
2	chr14:24659710..24661971-chr14:24783467..24786421,2	K562	blood:
3	chr14:24653860..24661964-chr14:24680820..24687057,41	MCF-7	breast:
4	chr14:24655120..24666858-chr14:24765577..24776253,24	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213920	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000213903	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000213906	Chromatin interaction
ENSG00000254692	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2229464	1.00[JPT][hapmap]
rs2234099	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv901498	chr14:24591892-24662177	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24658000-24662000	Weak transcription	Aorta	Aorta
2	chr14:24658000-24663400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:24658200-24663800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:24658200-24663800	Weak transcription	Psoas Muscle	Psoas
5	chr14:24658400-24661800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:24658600-24663200	Weak transcription	Stomach Mucosa	stomach
7	chr14:24658600-24663400	Strong transcription	Placenta	Placenta
8	chr14:24658600-24663400	Strong transcription	Fetal Stomach	stomach
9	chr14:24658600-24663600	Weak transcription	Fetal Heart	heart
10	chr14:24658800-24662400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr14:24658800-24662600	Strong transcription	Adipose Nuclei	Adipose
12	chr14:24658800-24662600	Strong transcription	Brain Cingulate Gyrus	brain
13	chr14:24658800-24662600	Strong transcription	Thymus	Thymus
14	chr14:24658800-24662800	Strong transcription	Fetal Intestine Small	intestine
15	chr14:24658800-24663200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr14:24658800-24663200	Weak transcription	Fetal Brain Male	brain
17	chr14:24658800-24663400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:24658800-24663400	Strong transcription	Fetal Muscle Leg	muscle
19	chr14:24658800-24663400	Strong transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:24658800-24663600	Genic enhancers	HepG2	liver
21	chr14:24658800-24663600	Weak transcription	HSMMtube	muscle
22	chr14:24659000-24661800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:24659000-24662400	Strong transcription	Brain Inferior Temporal Lobe	brain
24	chr14:24659000-24662400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr14:24659000-24662400	Strong transcription	Fetal Thymus	thymus
26	chr14:24659000-24662400	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr14:24659000-24662400	Strong transcription	NH-A	brain
28	chr14:24659000-24662600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:24659000-24662600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr14:24659000-24662600	Strong transcription	HSMM	muscle
31	chr14:24659000-24663400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:24659000-24663400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr14:24659000-24663600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:24659000-24663600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr14:24659000-24663600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:24659200-24662000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:24659200-24662400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:24659200-24662400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr14:24659200-24662400	Strong transcription	Primary T cells from cord blood	blood
40	chr14:24659200-24662400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:24659200-24662400	Strong transcription	Brain Anterior Caudate	brain
42	chr14:24659200-24662400	Strong transcription	HMEC	breast
43	chr14:24659200-24662600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr14:24659200-24662600	Strong transcription	Brain Hippocampus Middle	brain
45	chr14:24659200-24663000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:24659200-24663000	Weak transcription	K562	blood
47	chr14:24659200-24663200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:24659200-24663200	Strong transcription	Fetal Intestine Large	intestine
49	chr14:24659200-24663400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr14:24659200-24663400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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