Variant report

Variant	rs2234355
Chromosome Location	chr3:45987980-45987981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:45987551..45988458-chr3:46119930..46120914,4	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61145486	1.00[EUR][1000 genomes]
rs6772596	1.00[EUR][1000 genomes]
rs6785091	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs73830670	1.00[EUR][1000 genomes]
rs753110	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45958800-45988000	Weak transcription	HUVEC	blood vessel
2	chr3:45959400-46009800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:45970200-45988200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:45972800-45988600	Weak transcription	Small Intestine	intestine
5	chr3:45973800-45988000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:45973800-45991400	Weak transcription	Brain Germinal Matrix	brain
7	chr3:45974400-45988000	Weak transcription	Fetal Kidney	kidney
8	chr3:45977400-45988000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:45978000-45988000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:45978200-45988200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:45978800-45994400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:45979000-45988200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:45979000-45993000	Weak transcription	Stomach Mucosa	stomach
14	chr3:45979200-45988200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:45980800-45988000	Weak transcription	NH-A	brain
16	chr3:45980800-45989200	Weak transcription	Fetal Brain Male	brain
17	chr3:45980800-46013400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:45981000-45988000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:45981000-45988000	Weak transcription	NHDF-Ad	bronchial
20	chr3:45981000-45988000	Weak transcription	Osteobl	bone
21	chr3:45981000-45988200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:45981000-45990400	Weak transcription	Fetal Brain Female	brain
23	chr3:45981000-45993400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:45981000-45999400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr3:45981200-45988000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:45981200-45988000	Weak transcription	GM12878-XiMat	blood
27	chr3:45981400-45988400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr3:45981600-46025000	Strong transcription	Fetal Intestine Large	intestine
29	chr3:45982000-45988000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:45982000-45988400	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:45982200-45999800	Strong transcription	Stomach Smooth Muscle	stomach
32	chr3:45982800-45988000	Weak transcription	Aorta	Aorta
33	chr3:45982800-45988000	Weak transcription	NHEK	skin
34	chr3:45982800-45988200	Weak transcription	Hela-S3	cervix
35	chr3:45982800-46000800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:45983200-46012400	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr3:45983400-45988400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr3:45983400-45988800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:45984000-45994000	Weak transcription	HMEC	breast
40	chr3:45984200-45994200	Strong transcription	Liver	Liver
41	chr3:45984400-45988000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:45984400-45988000	Weak transcription	Lung	lung
43	chr3:45984400-45988600	Weak transcription	Right Atrium	heart
44	chr3:45984400-45998200	Strong transcription	Left Ventricle	heart
45	chr3:45984400-46000800	Weak transcription	Psoas Muscle	Psoas
46	chr3:45984600-45988000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:45984800-45988000	Weak transcription	Placenta	Placenta
48	chr3:45985000-45988000	Weak transcription	Ovary	ovary
49	chr3:45985400-45988000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:45985800-45988000	Weak transcription	Fetal Heart	heart

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