Variant report

Variant	rs223471
Chromosome Location	chr4:103698786-103698787
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs223317	1.00[CEU][hapmap]
rs223331	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs223361	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs223366	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs223374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs223401	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs223413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs223489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs223490	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2866416	0.96[CEU][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs223471	KRT8P46	cis	lung	GTEx
rs223471	MANBA	Cis_1M	lymphoblastoid	RTeQTL
rs223471	MANBA	cis	multi-tissue	Pritchard
rs223471	LRRC37A15P	cis	Thyroid	GTEx
rs223471	BDH2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103698400-103699400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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