Variant report

Variant	rs223486
Chromosome Location	chr4:103684953-103684954
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10003326	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs10012413	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11722779	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs150893	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs150895	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap]
rs223308	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223313	0.84[CEU][hapmap];0.85[CHB][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs223314	0.91[CEU][hapmap]
rs223315	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap]
rs223318	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223324	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs223326	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223330	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223334	0.80[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap]
rs223338	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223339	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap]
rs223346	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs223347	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223349	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223350	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs223353	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs223356	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223358	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223359	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223363	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs223367	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223381	0.92[CEU][hapmap]
rs223383	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap]
rs223385	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223390	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223392	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223395	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs223397	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs223400	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223401	0.91[JPT][hapmap]
rs223410	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap]
rs223412	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap]
rs223418	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs223419	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223420	0.81[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs223425	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223438	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs223441	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223446	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs223447	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs223448	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223450	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs223452	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs223454	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap]
rs223457	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap]
rs223458	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs223461	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223467	0.93[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap]
rs223474	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223475	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs223484	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs223497	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs223498	0.91[TSI][hapmap]
rs3774987	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3974604	0.89[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs3974608	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs5028609	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs6419160	0.80[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap]
rs6533041	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs65671	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs6823625	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs6824070	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs6846762	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7254	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7676943	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs9307281	0.87[CHB][hapmap];0.91[JPT][hapmap]

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs223486	CISD2	cis	lung	GTEx
rs223486	KRT8P46	cis	lung	GTEx
rs223486	MANBA	cis	parietal	SCAN
rs223486	CISD2	cis	Nerve Tibial	GTEx
rs223486	CISD2	cis	cerebellum	SCAN
rs223486	MANBA	cis	multi-tissue	Pritchard
rs223486	CISD2	cis	parietal	SCAN
rs223486	LRRC37A15P	cis	lung	GTEx
rs223486	CISD2	cis	Esophagus Muscularis	GTEx
rs223486	CISD2	cis	multi-tissue	Pritchard
rs223486	MANBA	cis	cerebellum	SCAN
rs223486	CISD2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103683000-103687600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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