Variant report

Variant	rs2235288
Chromosome Location	chr6:166870425-166870426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166870182..166872414-chr6:167234943..167236564,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2281057	0.91[EUR][1000 genomes]
rs2281058	0.91[EUR][1000 genomes]
rs2281059	0.91[EUR][1000 genomes]
rs2281060	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2281061	0.91[EUR][1000 genomes]
rs2281062	0.85[EUR][1000 genomes]
rs3799673	0.91[EUR][1000 genomes]
rs4709113	0.91[EUR][1000 genomes]
rs6456083	0.91[EUR][1000 genomes]
rs73790206	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7756092	0.91[EUR][1000 genomes]
rs9457169	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886938	chr6:166859725-166904398	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166825200-166875800	Weak transcription	Colonic Mucosa	Colon
4	chr6:166827000-166873400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:166833200-166879000	Weak transcription	NH-A	brain
6	chr6:166833400-166879000	Weak transcription	HSMM	muscle
7	chr6:166834200-166879400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:166846000-166881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:166861400-166873800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:166862000-166871600	Weak transcription	HMEC	breast
11	chr6:166862400-166871000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:166862400-166871000	Weak transcription	NHDF-Ad	bronchial
13	chr6:166862400-166873800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:166862400-166900600	Weak transcription	Primary T cells from cord blood	blood
15	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:166862600-166870800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:166862600-166871600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:166862600-166878800	Weak transcription	Brain Substantia Nigra	brain
19	chr6:166862600-166879400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:166862600-166883000	Weak transcription	Aorta	Aorta
21	chr6:166862600-166883000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:166862800-166871600	Weak transcription	Liver	Liver
23	chr6:166862800-166873800	Weak transcription	Spleen	Spleen
24	chr6:166862800-166878000	Weak transcription	HSMMtube	muscle
25	chr6:166863400-166871000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:166863400-166876600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:166863600-166900200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:166863600-166902000	Weak transcription	Small Intestine	intestine
29	chr6:166864000-166871000	Weak transcription	Primary B cells from cord blood	blood
30	chr6:166864200-166871000	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:166864200-166872600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:166864600-166870600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:166864600-166874000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:166864600-166883000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:166864800-166871400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:166864800-166871400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:166864800-166872400	Weak transcription	Brain Anterior Caudate	brain
38	chr6:166864800-166872800	Weak transcription	NHLF	lung
39	chr6:166864800-166873600	Weak transcription	Pancreas	Pancrea
40	chr6:166864800-166875600	Weak transcription	Gastric	stomach
41	chr6:166864800-166877400	Weak transcription	Brain Angular Gyrus	brain
42	chr6:166864800-166899800	Weak transcription	Esophagus	oesophagus
43	chr6:166865000-166871000	Weak transcription	Fetal Lung	lung
44	chr6:166865000-166875800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:166865200-166870800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:166867400-166874400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:166867400-166879200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:166867400-166892800	Weak transcription	Fetal Brain Male	brain
49	chr6:166867600-166870600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:166867600-166871400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links