Variant report

Variant	rs2235434
Chromosome Location	chr6:132642770-132642771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12661559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2294432	0.85[JPT][hapmap]
rs667465	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs858376	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2235434	LTA4H	trans	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132626600-132651400	Weak transcription	Fetal Stomach	stomach
2	chr6:132635600-132655000	Weak transcription	NH-A	brain
3	chr6:132637000-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:132638800-132643000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:132638800-132643800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132638800-132654800	Weak transcription	Fetal Kidney	kidney
7	chr6:132639000-132648800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132639000-132651200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:132639400-132644400	Strong transcription	Fetal Lung	lung
10	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:132641800-132643200	Weak transcription	NHDF-Ad	bronchial
12	chr6:132642000-132643000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:132642000-132643000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:132642000-132643000	Weak transcription	Osteobl	bone
15	chr6:132642000-132643600	Weak transcription	NHLF	lung
16	chr6:132642000-132643800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:132642600-132643000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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