Variant report

Variant rs2236452
Chromosome Location chr21:46876173-46876174
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:46859800-46880000 Weak transcription HUVEC blood vessel
2 chr21:46860000-46888200 Weak transcription iPS-18 Cell Line embryonic stem cell
3 chr21:46862000-46887600 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr21:46866600-46880000 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr21:46868600-46881600 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr21:46873000-46879600 Weak transcription A549 lung
7 chr21:46873000-46879800 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr21:46873200-46876200 Enhancers HMEC breast
9 chr21:46873200-46876200 Enhancers HSMM muscle
10 chr21:46873200-46876400 Enhancers Fetal Heart heart
11 chr21:46873400-46879800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr21:46873400-46880600 Weak transcription K562 blood
13 chr21:46873400-46880800 Weak transcription Fetal Kidney kidney
14 chr21:46873400-46881600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr21:46873800-46876400 Bivalent Enhancer Placenta Placenta
16 chr21:46874200-46876400 Enhancers Ovary ovary
17 chr21:46874400-46876200 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
18 chr21:46874600-46876200 Flanking Active TSS Adipose Nuclei Adipose
19 chr21:46874600-46876400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr21:46874600-46877000 Weak transcription Gastric stomach
21 chr21:46874800-46876200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr21:46874800-46876200 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
23 chr21:46874800-46879400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr21:46875000-46876200 Strong transcription HUES48 Cell Line embryonic stem cell
25 chr21:46875000-46876200 Active TSS Right Atrium heart
26 chr21:46875200-46876200 Flanking Active TSS Fetal Muscle Leg muscle
27 chr21:46875200-46877000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr21:46875200-46877000 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
29 chr21:46875200-46877200 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
30 chr21:46875200-46877800 Active TSS Colon Smooth Muscle Colon
31 chr21:46875200-46877800 Active TSS Rectal Smooth Muscle rectum
32 chr21:46875400-46876200 Flanking Active TSS Brain Hippocampus Middle brain
33 chr21:46875400-46876200 Active TSS Rectal Mucosa Donor 31 rectum
34 chr21:46875400-46876200 Flanking Bivalent TSS/Enh Skeletal Muscle Female skeletal muscle
35 chr21:46875400-46876400 Flanking Active TSS Esophagus oesophagus
36 chr21:46875400-46877000 Strong transcription H1 Cell Line embryonic stem cell
37 chr21:46875400-46877000 Active TSS Liver Liver
38 chr21:46875400-46877400 Strong transcription H9 Cell Line embryonic stem cell
39 chr21:46875400-46879200 Strong transcription HUES6 Cell Line embryonic stem cell
40 chr21:46875400-46880400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr21:46875600-46876800 Active TSS Stomach Smooth Muscle stomach
42 chr21:46875600-46877200 Weak transcription HepG2 liver
43 chr21:46875600-46878600 Active TSS Brain Substantia Nigra brain
44 chr21:46875600-46880000 Weak transcription NHDF-Ad bronchial
45 chr21:46875600-46881400 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr21:46875800-46876200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr21:46875800-46876200 Bivalent Enhancer Fetal Muscle Trunk muscle
48 chr21:46875800-46876200 Genic enhancers Fetal Stomach stomach
49 chr21:46875800-46876400 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
50 chr21:46875800-46876400 Bivalent/Poised TSS Colonic Mucosa Colon

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