Variant report

Variant	rs2237110
Chromosome Location	chr6:15509792-15509793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15244984..15247344-chr6:15506615..15509940,3	K562	blood:
2	chr6:15503839..15505858-chr6:15508494..15510367,2	K562	blood:
3	chr6:15503488..15507338-chr6:15507850..15510659,7	K562	blood:
4	chr6:15247335..15250769-chr6:15507834..15511704,4	K562	blood:
5	chr6:15507513..15510488-chr6:15519639..15522000,2	MCF-7	breast:
6	chr6:15509109..15512241-chr6:15513329..15516207,3	K562	blood:
7	chr6:15508040..15509994-chr6:15621432..15624350,2	K562	blood:
8	chr6:15497600..15499927-chr6:15509005..15511322,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16876554	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs16876555	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs2064099	0.85[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs2076058	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2743861	1.00[MEX][hapmap]
rs2743867	0.82[MEX][hapmap]
rs2769563	0.82[MEX][hapmap]
rs3778651	0.82[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6903151	0.83[EUR][1000 genomes]
rs742206	0.82[MEX][hapmap]
rs7756497	0.85[CEU][hapmap]
rs9296975	0.82[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs9464792	0.85[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476837	0.82[MEX][hapmap]
rs9654600	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv522265	chr6:15494177-15546213	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv970297	chr6:15507861-15511435	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15492200-15527000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:15492400-15527200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:15492600-15522200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:15492800-15515000	Strong transcription	Thymus	Thymus
5	chr6:15492800-15527000	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:15493800-15520000	Weak transcription	Hela-S3	cervix
7	chr6:15494200-15522400	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:15494800-15524000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:15494800-15527000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr6:15495000-15527200	Strong transcription	Dnd41	blood
11	chr6:15495000-15529200	Strong transcription	Primary T cells from cord blood	blood
12	chr6:15495200-15525800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:15495400-15525000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:15496000-15525200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:15496000-15525600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:15496000-15526600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:15496000-15528400	Strong transcription	Primary B cells from cord blood	blood
18	chr6:15496600-15517000	Weak transcription	Small Intestine	intestine
19	chr6:15497400-15526600	Strong transcription	Fetal Intestine Large	intestine
20	chr6:15498400-15522600	Strong transcription	Primary hematopoietic stem cells	blood
21	chr6:15500600-15524600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:15502400-15522400	Weak transcription	A549	lung
23	chr6:15502800-15521400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:15505200-15521600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:15505600-15515000	Genic enhancers	Right Ventricle	heart
26	chr6:15505800-15510000	Genic enhancers	H1 Cell Line	embryonic stem cell
27	chr6:15505800-15510800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:15505800-15518800	Strong transcription	Colonic Mucosa	Colon
29	chr6:15506000-15513800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:15506000-15514600	Weak transcription	NHDF-Ad	bronchial
31	chr6:15506000-15522000	Weak transcription	Stomach Mucosa	stomach
32	chr6:15506000-15523600	Strong transcription	NHEK	skin
33	chr6:15506000-15527000	Strong transcription	Fetal Intestine Small	intestine
34	chr6:15506200-15510000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:15506200-15510600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:15506200-15510800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:15506200-15511800	Weak transcription	Fetal Heart	heart
38	chr6:15506200-15514600	Strong transcription	Esophagus	oesophagus
39	chr6:15506200-15515800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr6:15506200-15516400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:15506200-15522400	Strong transcription	GM12878-XiMat	blood
42	chr6:15506200-15523000	Weak transcription	HUVEC	blood vessel
43	chr6:15506400-15510000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:15506400-15512000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:15506600-15510400	Weak transcription	Psoas Muscle	Psoas
46	chr6:15506600-15510400	Strong transcription	HMEC	breast
47	chr6:15506600-15511200	Strong transcription	Adipose Nuclei	Adipose
48	chr6:15506600-15523800	Weak transcription	Fetal Brain Male	brain
49	chr6:15506600-15527400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr6:15506800-15511800	Strong transcription	HepG2	liver

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