Variant report

Variant	rs2237121
Chromosome Location	chr6:15494075-15494076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15493055..15494840-chr6:15568321..15570199,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1474588	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2076055	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237113	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2237117	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237118	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237119	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2237120	0.85[CHD][hapmap]
rs2237123	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2237124	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237132	0.82[EUR][1000 genomes]
rs2237141	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237145	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs2237150	0.82[GIH][hapmap];0.92[MEX][hapmap]
rs2237156	0.84[MEX][hapmap];0.83[TSI][hapmap]
rs2282821	0.91[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2299045	0.88[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2299048	0.84[CEU][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs2299054	0.84[MEX][hapmap];0.81[TSI][hapmap]
rs3778652	0.88[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs4085876	0.88[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs6459406	0.88[EUR][1000 genomes]
rs7754701	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7754755	0.87[EUR][1000 genomes]
rs9349979	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370817	0.92[CEU][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9370819	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383054	0.84[MEX][hapmap];0.81[TSI][hapmap]
rs9383061	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9476827	0.88[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15471000-15502000	Weak transcription	A549	lung
2	chr6:15484800-15496400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:15486800-15502000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:15487200-15508000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:15489200-15495800	Weak transcription	HMEC	breast
6	chr6:15489200-15496200	Weak transcription	Small Intestine	intestine
7	chr6:15489200-15496800	Weak transcription	Colonic Mucosa	Colon
8	chr6:15489200-15504400	Weak transcription	Fetal Brain Female	brain
9	chr6:15489600-15495400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:15489800-15495200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:15489800-15495600	Weak transcription	Aorta	Aorta
12	chr6:15490000-15494600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:15490000-15495800	Weak transcription	Liver	Liver
14	chr6:15490000-15496200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:15490000-15496400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:15490200-15495200	Weak transcription	Lung	lung
17	chr6:15490200-15495600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:15490200-15495600	Weak transcription	Esophagus	oesophagus
19	chr6:15490200-15496400	Weak transcription	Gastric	stomach
20	chr6:15490200-15496400	Weak transcription	Pancreas	Pancrea
21	chr6:15490800-15496800	Enhancers	HSMMtube	muscle
22	chr6:15491000-15495400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr6:15491200-15495000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:15491400-15494600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:15491400-15496200	Enhancers	Ovary	ovary
26	chr6:15491600-15495000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:15491800-15494200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:15491800-15495200	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:15491800-15501400	Weak transcription	NH-A	brain
30	chr6:15492000-15495000	Weak transcription	Placenta	Placenta
31	chr6:15492000-15496800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:15492000-15498400	Weak transcription	Stomach Mucosa	stomach
33	chr6:15492000-15501800	Weak transcription	Fetal Brain Male	brain
34	chr6:15492200-15495200	Weak transcription	Fetal Heart	heart
35	chr6:15492200-15495400	Weak transcription	Fetal Lung	lung
36	chr6:15492200-15495600	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:15492200-15495600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:15492200-15495800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:15492200-15495800	Weak transcription	Osteobl	bone
40	chr6:15492200-15501200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:15492200-15507800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:15492200-15508200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr6:15492200-15527000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:15492400-15494200	Strong transcription	Fetal Stomach	stomach
45	chr6:15492400-15494200	Weak transcription	NHDF-Ad	bronchial
46	chr6:15492400-15494200	Weak transcription	NHLF	lung
47	chr6:15492400-15495000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:15492400-15495400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:15492400-15495400	Weak transcription	Brain Angular Gyrus	brain
50	chr6:15492400-15495400	Weak transcription	Brain Anterior Caudate	brain

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