Variant report

Variant	rs2237149
Chromosome Location	chr6:15412065-15412066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15410616..15413310-chr6:15424661..15426461,2	MCF-7	breast:
2	chr6:15383937..15385749-chr6:15410927..15412841,2	MCF-7	breast:
3	chr6:15402174..15407413-chr6:15410357..15414538,6	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2072819	0.90[EUR][1000 genomes]
rs2237141	0.80[AMR][1000 genomes]
rs2237145	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2237150	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237152	0.88[EUR][1000 genomes]
rs2237153	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237156	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237157	0.90[EUR][1000 genomes]
rs2299045	0.86[ASN][1000 genomes]
rs2299053	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2299054	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4085876	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6459406	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7754701	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7754755	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9349978	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9358059	0.93[EUR][1000 genomes]
rs9358060	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9370813	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9383051	0.91[EUR][1000 genomes]
rs9383054	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9464785	0.90[EUR][1000 genomes]
rs9464787	0.91[EUR][1000 genomes]
rs9476820	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1019927	chr6:15351240-15419257	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv538145	chr6:15351240-15419257	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15400400-15412800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:15401200-15414000	Weak transcription	Aorta	Aorta
3	chr6:15401200-15417200	Weak transcription	Lung	lung
4	chr6:15401200-15426200	Weak transcription	Pancreas	Pancrea
5	chr6:15401600-15415800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:15402600-15413600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:15403000-15413600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:15403000-15422000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:15404600-15413000	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:15404600-15413400	Weak transcription	Ovary	ovary
11	chr6:15404600-15413400	Weak transcription	Osteobl	bone
12	chr6:15404600-15413600	Weak transcription	NHEK	skin
13	chr6:15404600-15413800	Weak transcription	Esophagus	oesophagus
14	chr6:15404600-15420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:15404600-15421200	Weak transcription	Spleen	Spleen
16	chr6:15404800-15413400	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:15404800-15417800	Weak transcription	NH-A	brain
18	chr6:15404800-15427600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:15404800-15429000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:15405000-15413800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:15405200-15418600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:15405400-15417000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:15405600-15413600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:15405600-15422000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:15405800-15421200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:15406600-15416400	Weak transcription	Thymus	Thymus
27	chr6:15406600-15417000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:15406600-15417000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:15406800-15416200	Weak transcription	Fetal Intestine Small	intestine
30	chr6:15407000-15413000	Weak transcription	Brain Germinal Matrix	brain
31	chr6:15407800-15414200	Enhancers	Fetal Heart	heart
32	chr6:15408600-15412600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:15409000-15412400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:15409000-15412400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:15409000-15412600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:15409000-15414400	Enhancers	Primary T cells from cord blood	blood
37	chr6:15409200-15412200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr6:15409200-15413000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr6:15409200-15413800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:15409200-15426200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:15409400-15412800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr6:15409600-15412800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:15409800-15413600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:15410000-15412200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:15410200-15412600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:15410200-15412800	Weak transcription	Fetal Intestine Large	intestine
47	chr6:15410400-15412200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:15410400-15412400	Genic enhancers	K562	blood
49	chr6:15410400-15412600	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr6:15410400-15412800	Genic enhancers	Primary B cells from peripheral blood	blood

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