Variant report

Variant	rs2237301
Chromosome Location	chr7:21472441-21472442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21465891..21468738-chr7:21469069..21472897,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105866	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10950852	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10950853	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12672607	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17144437	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17144460	0.84[AMR][1000 genomes]
rs2282892	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2282896	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3807641	0.81[AMR][1000 genomes]
rs3823777	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57470202	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59245562	0.82[AMR][1000 genomes]
rs59762451	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60253697	0.82[AMR][1000 genomes]
rs60430902	0.85[AMR][1000 genomes]
rs6974357	0.84[ASN][1000 genomes]
rs7793276	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21468400-21490600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:21468400-21497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:21468600-21476600	Weak transcription	NHEK	skin
4	chr7:21468600-21478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:21468600-21488600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:21468600-21495600	Weak transcription	Fetal Intestine Large	intestine
7	chr7:21468800-21489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:21468800-21493600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:21469000-21474800	Weak transcription	A549	lung
10	chr7:21469000-21483800	Weak transcription	Adipose Nuclei	Adipose
11	chr7:21469800-21474400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:21470000-21488600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:21470000-21490400	Weak transcription	Fetal Kidney	kidney
14	chr7:21470000-21497800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:21470200-21488600	Weak transcription	Gastric	stomach
16	chr7:21470200-21490600	Weak transcription	Psoas Muscle	Psoas
17	chr7:21470200-21494400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:21470400-21472800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:21470400-21477400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:21470400-21481000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:21470400-21488600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:21470400-21490600	Weak transcription	Pancreas	Pancrea
23	chr7:21470400-21494600	Weak transcription	Fetal Stomach	stomach
24	chr7:21470400-21516600	Weak transcription	Liver	Liver
25	chr7:21470400-21536400	Weak transcription	Esophagus	oesophagus
26	chr7:21470600-21472800	Active TSS	Fetal Brain Female	brain
27	chr7:21470600-21475200	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:21470600-21477400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:21470600-21490800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr7:21470800-21472600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr7:21471000-21472800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:21471400-21472800	Enhancers	Colon Smooth Muscle	Colon
33	chr7:21471400-21473200	Enhancers	Primary B cells from peripheral blood	blood
34	chr7:21471400-21480200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:21471600-21473000	Enhancers	Brain Substantia Nigra	brain
36	chr7:21471600-21473200	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr7:21471600-21474800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr7:21471600-21488400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:21471800-21472600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:21471800-21472800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr7:21471800-21472800	Enhancers	K562	blood
42	chr7:21471800-21473200	Enhancers	Ovary	ovary
43	chr7:21471800-21484000	Weak transcription	HUVEC	blood vessel
44	chr7:21471800-21486600	Weak transcription	Aorta	Aorta
45	chr7:21472000-21472800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr7:21472000-21472800	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr7:21472000-21472800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr7:21472000-21472800	Enhancers	Brain Anterior Caudate	brain
49	chr7:21472000-21472800	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr7:21472000-21473200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links