Variant report

Variant	rs2237675
Chromosome Location	chr7:107197580-107197581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107181589..107184372-chr7:107196646..107198393,3	K562	blood:
2	chr7:107181589..107184372-chr7:107196670..107198393,2	K562	blood:
3	chr7:107195231..107197923-chr7:107218574..107220615,2	K562	blood:
4	chr7:107190231..107193854-chr7:107195666..107198677,4	K562	blood:

Variant related genes	Relation type
ENSG00000075790	Chromatin interaction
ENSG00000272854	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2299424	1.00[AMR][1000 genomes]
rs2299427	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2299430	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73419474	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73419490	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107162200-107203400	Weak transcription	Fetal Kidney	kidney
2	chr7:107170200-107203600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:107172800-107200200	Weak transcription	Psoas Muscle	Psoas
4	chr7:107179400-107203200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:107183200-107198800	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:107185000-107200200	Weak transcription	Pancreas	Pancrea
7	chr7:107185000-107203600	Weak transcription	Gastric	stomach
8	chr7:107185200-107199800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:107185200-107203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:107185200-107203800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:107186000-107200000	Weak transcription	Stomach Mucosa	stomach
12	chr7:107186000-107200200	Weak transcription	NHLF	lung
13	chr7:107186000-107203000	Weak transcription	Brain Germinal Matrix	brain
14	chr7:107186000-107203600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:107186200-107199800	Weak transcription	Small Intestine	intestine
16	chr7:107186200-107200000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:107186200-107203600	Weak transcription	Esophagus	oesophagus
18	chr7:107186200-107203800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:107186400-107200000	Weak transcription	Fetal Heart	heart
20	chr7:107186600-107198800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:107186800-107197600	Weak transcription	Fetal Lung	lung
22	chr7:107186800-107203000	Weak transcription	A549	lung
23	chr7:107186800-107203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr7:107187400-107203000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:107188000-107198400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:107188000-107202400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:107188000-107203800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:107188600-107199800	Weak transcription	Hela-S3	cervix
29	chr7:107190000-107203400	Weak transcription	Fetal Brain Male	brain
30	chr7:107192000-107197800	Strong transcription	Primary B cells from cord blood	blood
31	chr7:107192000-107198000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:107192000-107198200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:107192000-107198600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:107192200-107198400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr7:107192200-107198600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:107192200-107198800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:107192200-107198800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:107192400-107198400	Strong transcription	K562	blood
39	chr7:107192400-107200200	Weak transcription	Right Atrium	heart
40	chr7:107193000-107197800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr7:107193000-107198000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr7:107193000-107198200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:107193000-107198200	Strong transcription	Liver	Liver
44	chr7:107193000-107198200	Strong transcription	HUVEC	blood vessel
45	chr7:107193000-107198200	Strong transcription	NH-A	brain
46	chr7:107193000-107198400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr7:107193000-107198400	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr7:107193000-107198600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:107193000-107198600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:107193000-107198800	Strong transcription	NHEK	skin

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